Research intern at IIT Kharagpur Kolkata, India

Arnesh Banerjee

Machine learning & software engineering

I’m a final-year computer science student. I work on medical imaging, multi-omics cancer modelling and LLM alignment, with research at IIT Kharagpur, Jadavpur University and NJIT. On the side, I rebuilt the training pipeline for Kimi K3 and contribute to open source.

Experience03

IIT Kharagpur May 2026 – now

Summer research intern, with Dr. Sourangshu Bhattacharya

A multi-omic network for head-and-neck cancer, where DNA methylation alone tells oral from non-oral tumour origin at 0.937 accuracy.

  • Benchmarked an improved MoXGATE multi-omic network (0.827 to 0.927 accuracy) against LightGBM on 6 TCGA data types from 528 head-and-neck cancer patients, across all 63 data-type combinations (2,040 models per pipeline).
  • Showed that DNA methylation alone predicts oral vs. non-oral tumour origin at 0.937 accuracy.
  • Explained the model with TreeSHAP: 87% of its decision traces to methylation probes in the developmental HOX and PITX2 genes, and a 50-probe signature keeps 0.935 accuracy.
  • Ruled out HPV and hospital confounds, with 16 of 16 HPV-negative laryngeal tumours correct.

Advisor Offer letter Certificate Department certificate

Jadavpur University Nov 2025 – May 2026

Research intern, CMATER Lab, with Prof. Debotosh Bhattacharjee

A hybrid CNN-Transformer that segments breast thermograms at 0.9716 Dice.

  • ResNet-34 encoder, ASPP, a Transformer bottleneck and SE-gated skips, trained with a differentiable Chan-Vese loss: 0.9716 Dice and 0.9463 IoU on DMR-IR (357 thermograms, 119 patients), patient-stratified 5-fold.
  • Benchmarked against Attention U-Net, UNet++, DeepLabV3+ and TransUNet on five metrics. All reach about 0.97 Dice (p > 0.05), which shows the annotations are the ceiling.
  • Added robustness tests (label noise, augmentation, smaller training sets) and explainability (Grad-CAM, attention maps, MC-dropout uncertainty) for clinicians.

Advisor Certificate

New Jersey Institute of Technology Jun – Nov 2025

Summer research intern, Learning-based Decision Making Lab, with Dr. Arnob Ghosh

A semantic safety cost model for LLM alignment that agrees with human safety judgments 92% of the time.

  • Built a 2,500-pair safety dataset (benign, context-sensitive and jailbreak prompts) and fine-tuned the last six layers of LLaMA-2-7B-chat into the cost model.
  • Scored 0.91 to 0.96 on XS-Test, against 0.07 to 0.32 for Safe-RLHF, so it does not refuse on keywords alone.
  • The trained policy flags unsafe responses 5× more efficiently than Safe-RLHF and wins 60% of head-to-head comparisons (+70 Elo) against SACPO. Co-author of the preprint.

Advisor Paper Certificate

Projects03

Kimi K3 for All

PyTorch · Triton · CUDA

Moonshot released Kimi K3 with inference code only. I rebuilt the training pipeline from scratch, fixed the four places where the released code cannot train, and trained a 1.27B test model with it.

Write-up GitHub Hugging Face

Jupyter for Zed

Rust · WebAssembly · LSP

A Zed extension for Jupyter notebooks. A language server checks .ipynb files, and code actions run cells on real kernels, with plots and tables inline.

GitHub

DebateBench

Python · LiteLLM · Docker

LLMs debate a topic over several rounds as anonymous agents. Each agent gets a fresh random code every round, so the judge never learns which model wrote what.

Watch the demo GitHub

Research04

Recursive and Wrapper-Based Feature Selection for Breast Cancer Diagnosis and Prognosisoral

2026

A. Bhattacharjee, A. Banerjee, A. Talukdar AGC 2026

K. Pandit, S. Ganguly, A. Banerjee, S. Angizi, A. Ghosh arXiv:2510.03520

An Intelligent Weakly Supervised Framework for Breast Thermography Segmentation Using Hybrid CNN–Transformer Networks

in prep

A. Banerjee, D. Bhattacharjee for Expert Systems with Applications

All papers on Google Scholar

Open source

Merged pull requests to projects such as CPython, Rust, Zed, OpenCV and Kubescape.

All pull requests on GitHub

Writing02

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